Transcription Factor
| Accessions: | T075499_1.02 (CISBP 1.02), Q84JQ8 (JASPAR 2024), T02936 (AthalianaCistrome v4_May2016) |
| Names: | AT1G64620, T075499_1.02;, AtDOF1.8, Dof zinc finger protein DOF1.8, DOF18_ARATH, T02936; |
| Organisms: | Arabidopsis thaliana |
| Libraries: | CISBP 1.02 1, JASPAR 2024 2, AthalianaCistrome v4_May2016 3 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 3 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | experiment type:PBM, family:Dof, ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:C2C2-DOF |
| Length: | 352 |
| Pfam Domains: | 45-106 Dof domain, zinc finger |
| Sequence: (in bold interface residues) | 1 MDTAKWPQEFVVKPMNEIVTNTCLKQQSNPPSPATPVERKARPEKDQALNCPRCNSLNTK 60 61 FCYYNNYSLTQPRYFCKDCRRYWTAGGSLRNIPVGGGVRKNKRSSSNSSSSSPSSSSSSK 120 121 KPLFANNNTPTPPLPHLNPKIGEAAATKVQDLTFSQGFGNAHEVKDLNLAFSQGFGIGHN 180 181 HHSSIPEFLQVVPSSSMKNNPLVSTSSSLELLGISSSSASSNSRPAFMSYPNVHDSSVYT 240 241 ASGFGLSYPQFQEFMRPALGFSLDGGDPLRQEEGSSGTNNGRPLLPFESLLKLPVSSSST 300 301 NSGGNGNLKENNDEHSDHEHEKEEGEADQSVGFWSGMLSAGASAAASGGSWQ |
| Interface Residues: | 31, 35, 57, 60, 63, 64, 85, 87, 88 |
| 3D-footprint Homologues: | 6e94_A, 5omv_A |
| Binding Motifs: | M0647_1.02 vawAAaGtdr MA0981.1 vawAAaGtdr M0251 sAAAAAGkwaa M0263 wwaaaamAAAAAGkwaaww MA0981.2 AAaG |
| Binding Sites: | MA0981.1.14 MA0981.1.1 MA0981.1.10 MA0981.1.11 MA0981.1.12 MA0981.1.13 MA0981.1.15 MA0981.1.16 MA0981.1.17 MA0981.1.18 MA0981.1.19 MA0981.1.2 MA0981.1.20 MA0981.1.3 MA0981.1.4 MA0981.1.5 MA0981.1.6 MA0981.1.7 MA0981.1.8 MA0981.1.9 MA0981.2.1 MA0981.2.10 MA0981.2.11 MA0981.2.12 MA0981.2.13 MA0981.2.14 MA0981.2.15 MA0981.2.16 MA0981.2.17 MA0981.2.18 MA0981.2.19 MA0981.2.2 MA0981.2.20 MA0981.2.3 MA0981.2.4 MA0981.2.5 MA0981.2.6 MA0981.2.7 MA0981.2.8 MA0981.2.9 |
| Publications: | Yanagisawa S. Dof1 and Dof2 transcription factors are associated with expression of multiple genes involved in carbon metabolism in maize. Plant J. 21:281-288 (2000). [Pubmed] |
| Related annotations: | PaperBLAST |
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