DNA Binding Motif

						

			
Accessions: 2d5v_B (3D-footprint 20231221)

			
Names: Hepatocyte nuclear factor 6
Organisms: Rattus norvegicus
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Crystal structure of HNF-6alpha DNA-binding domain in complex with the TTR promoter
Length: 9
Consensus: TgGTCAaTA
Weblogo: 
PSSM: P0      A      C      G      T
01      8      8      8     72      T
02     16      8     56     16      g
03      0      0     96      0      G
04      0      0      0     96      T
05      0     96      0      0      C
06     96      0      0      0      A
07     64     16      8      8      a
08      0      0      0     96      T
09     96      0      0      0      A
Binding TFs: 2d5v_B (Homeobox domain, CUT domain)
Binding Sites: 2d5v_E
2d5v_F
			
Publications: Iyaguchi D, Yao M, Watanabe N, Nishihira J, Tanaka I. DNA recognition mechanism of the ONECUT homeodomain of transcription factor HNF-6. Structure (London, England : 1993) 15:75-83 (2007). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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