DNA Binding Motif

						

			
Accessions: 5yzz_C (3D-footprint 20231221)

			
Names: B3 domain-containing transcription repressor VAL1
Organisms: Arabidopsis thaliana
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: AtVAL1 B3 domain in complex with 13bp-DNA
Length: 6
Consensus: CATGCa
Weblogo: 
PSSM: P0      A      C      G      T
01      9     67      9     11      C
02     87      3      3      3      A
03      7      7      7     75      T
04      0      0     96      0      G
05      7     75      7      7      C
06     52     14     16     14      a
Binding TFs: 5yzz_C (B3 DNA binding domain)
Binding Sites: 5yzz_A
5yzz_B
			
Publications: Wu B, Zhang M, Su S, Liu H, Gan J, Ma J. Structural insight into the role of VAL1 B3 domain for targeting to FLC locus in Arabidopsis thaliana. Biochem Biophys Res Commun 501:415-422 (2018). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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