DNA Binding Motif

						

			
Accessions: 5n9g_ABC (3D-footprint 20231221)

			
Names: TATA-box-binding protein
Organisms: Homo sapiens
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: TFIIIB -TBP/Brf2/DNA and SANT domain of Bdp1-
Length: 19
Consensus: gnnnnannTATTTTAAnnC
Weblogo: 
PSSM: P0      A      C      G      T
01      8      8     63     17      g
02     24     24     24     24      n
03     24     24     24     24      n
04     24     24     24     24      n
05     24     24     24     24      n
06     61     19      8      8      a
07     24     24     24     24      n
08     24     24     24     24      n
09      0      0      0     96      T
10     96      0      0      0      A
11      0      0      0     96      T
12      0      0      0     96      T
13      0      0      0     96      T
14      0      0      0     96      T
15     96      0      0      0      A
16     96      0      0      0      A
17     24     24     24     24      n
18     24     24     24     24      n
19     11     69      8      8      C
Binding TFs: 5n9g_B (Transcription factor TFIID (or TATA-binding protein, TBP))
Binding Sites: 5n9g_D
5n9g_E
5n9g_a
5n9g_b
			
Publications: Gouge J, Guthertz N, Kramm K, Dergai O, Abascal-Palacios G, Satia K, Cousin P, Hernandez N, Grohmann D, Vannini A. Molecular mechanisms of Bdp1 in TFIIIB assembly and RNA polymerase III transcription initiation. Nat Commun 8:130 (2017). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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