DNA Binding Motif

						

			
Accessions: 6mg2_AB (3D-footprint 20231221)

			
Names: CCAAT/enhancer-binding protein beta
Organisms: Homo sapiens
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: C-terminal bZIP domain of human C/EBPbeta with 16bp Methylated Oligonucleotide Containing Consensus Recognition Sequence-C2221 Crystal Form
Length: 10
Consensus: ATTGCGnAAT
Weblogo: 
PSSM: P0      A      C      G      T
01     67      9     11      9      A
02      0      0      0     96      T
03      0      0      0     96      T
04     11      9     67      9      G
05      0     96      0      0      C
06      0      0     96      0      G
07     24     24     24     24      n
08     96      0      0      0      A
09     96      0      0      0      A
10      9      9      9     69      T
Type: Heterodimer
Binding TFs: 6mg2_A (bZIP transcription factor, Basic region leucine zipper)
6mg2_B (bZIP transcription factor, Basic region leucine zipper)
Binding Sites: 6mg2_D
6mg2_C
			
Publications: Yang J, Horton JR, Wang D, Ren R, Li J, Sun D, Huang Y, Zhang X, Blumenthal RM, Cheng X. Structural basis for effects of CpA modifications on C/EBPβ binding of DNA. Nucleic Acids Res : (2018). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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