DNA Binding Motif

						

			
Accessions: UP00472A_3 (UniPROBE 20160601)

			
Names: Vhr2, VHt1 Regulator
Organisms: Saccharomyces cerevisiae
Libraries: UniPROBE 20160601 1
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
Length: 12
Consensus: ATGACTwCacgC
Weblogo: 
PSSM: P0      A      C      G      T
01   0.85   0.05   0.07   0.02      A
02   0.03   0.05      0   0.92      T
03   0.01   0.01   0.98      0      G
04   0.97      0   0.02      0      A
05      0   0.78   0.01   0.20      C
06   0.01   0.02      0   0.97      T
07   0.46   0.01   0.25   0.29      w
08      0   0.87   0.03   0.09      C
09   0.63   0.15   0.13   0.09      a
10   0.24   0.56   0.08   0.13      c
11   0.13   0.12   0.64   0.11      g
12   0.07   0.71   0.08   0.13      C
Binding TFs: UP00472A (Transcription factor Vhr1)
Binding Sites: GTGACTCA
ATGACTAA
ATGACTCA
ATGAGTCA
CATGACTC
CTGACTCA
CTGAGTCA
GAGTCACA
GAGTCACC
GAGTCATA
GAGTCATC
GTGAGTCA
TGACTCAA
AATGACTC
AGAGTCAT
AGTCATCG
ATGACTAC
ATGACTCC
CATGACTA
GATGACTA
			
Publications: Gordân R, Murphy KF, McCord RP, Zhu C, Vedenko A, Bulyk ML. Curated collection of yeast transcription factor DNA binding specificity data reveals novel structural and gene regulatory insights. Genome Biol : (2011). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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