DNA Binding Motif

						

			
Accessions: NFATC1_3 (HT-SELEX2 May2017)

			
Names: NFATC1
Organisms: Homo sapiens
Libraries: HT-SELEX2 May2017 1
1 Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]
Length: 18
Consensus: kTTTCCrytaayGGAAAm
Weblogo: 
PSSM: P0      A      C      G      T
01   2015   2011   3307   4646      k
02    868    123   2466  11978      T
03      0     18     13  11978      T
04      6     14      0  11978      T
05      1  11978      7      1      C
06     10  11978      1      0      C
07   7864    125   4114    555      r
08   1093   3324    631   6932      y
09   2281   2950   2280   4468      t
10   4544   2362   2775   2298      a
11   7359    726   2790   1103      a
12    590   4360    111   7618      y
13      0      0  11978      5      G
14      0     17  11978      2      G
15  11978     19     11      5      A
16  11978      9     15      7      A
17  11978   2579    184    926      A
18   4454   3456   1966   2102      m
Binding TFs: NFATC1 (Rel homology domain (RHD), IPT/TIG domain)
			
Publications: Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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