DNA Binding Motif
| Accessions: | 2kmk_A (3D-footprint 20231221) |
| Names: | Zinc finger protein Gfi-1 |
| Organisms: | Rattus norvegicus |
| Libraries: | 3D-footprint 20231221 1 1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed] |
| Description: | Gfi-1 Zinc Fingers 3-5 complexed with DNA |
| Length: | 9 |
| Consensus: | GGcAtTGAT |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0 0 96 0 G 02 0 0 96 0 G 03 10 53 12 21 c 04 96 0 0 0 A 05 12 21 10 53 t 06 0 0 0 96 T 07 0 0 96 0 G 08 85 1 10 0 A 09 0 0 0 96 T |
| Binding TFs: | 2kmk_A (Zinc finger, C2H2 type, Zinc-finger of C2H2 type, Zinc-finger double domain, C2H2-type zinc finger, C2H2-type zinc finger) |
| Binding Sites: | 2kmk_B 2kmk_C |
| Publications: | Lee S, Doddapaneni K, Hogue A, McGhee L, Meyers S, Wu Z. Solution structure of Gfi-1 zinc domain bound to consensus DNA. Journal of molecular biology 397:1055-66 (2010). [Pubmed] |
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