Transcription Factor
Accessions: | 2kmk_A (3D-footprint 20231221) |
Names: | GFI1_RAT, Growth factor independent protein 1, Zinc finger protein Gfi-1 |
Organisms: | Rattus norvegicus |
Libraries: | 3D-footprint 20231221 1 1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed] |
Uniprot: | Q07120 |
Length: | 82 |
Pfam Domains: | 2-24 Zinc finger, C2H2 type 2-21 Zinc-finger of C2H2 type 2-24 C2H2-type zinc finger 4-20 C2H2-type zinc finger 17-40 Zinc-finger double domain 30-48 C2H2-type zinc finger 30-52 Zinc finger, C2H2 type 30-40 C2H2-type zinc finger 45-68 Zinc-finger double domain 57-80 C2H2-type zinc finger 58-80 C2H2-type zinc finger 58-80 Zinc finger, C2H2 type |
Sequence: (in bold interface residues) | 1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKC 60 61 QVCGKAFSQSSNLITHSRKHTG |
Interface Residues: | 2, 12, 13, 14, 15, 16, 18, 19, 21, 22, 25, 40, 41, 42, 43, 44, 46, 47, 48, 68, 69, 70, 71, 72, 73, 74, 75, 76, 79 |
3D-footprint Homologues: | 2kmk_A, 1tf3_A, 6jnm_A, 6ml4_A, 7n5w_A, 5ei9_F, 1mey_C, 5kl3_A, 2drp_D, 7ysf_A, 6wmi_A, 5k5i_A, 8ssq_A, 7w1m_H, 5und_A, 2gli_A, 1g2f_F, 8ssu_A, 5v3j_F, 4x9j_A, 2i13_A, 8gn3_A, 1llm_D, 6blw_A, 5kkq_D, 1ubd_C, 6u9q_A, 5yel_A, 8h9h_G, 7eyi_G, 6e94_A, 2lt7_A, 6a57_A, 2jpa_A, 3uk3_C, 8cuc_F, 7y3l_A, 7txc_E, 1f2i_J, 5yj3_D, 5k5l_F, 1tf6_A, 2wbs_A, 4m9v_C, 7y3m_I |
Binding Motifs: | 2kmk_A GGcAtTGAT |
Binding Sites: | 2kmk_B 2kmk_C |
Publications: | Lee S, Doddapaneni K, Hogue A, McGhee L, Meyers S, Wu Z. Solution structure of Gfi-1 zinc domain bound to consensus DNA. Journal of molecular biology 397:1055-66 (2010). [Pubmed] |
Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.