DNA Binding Motif

						

			
Accessions: MA1989.1 (JASPAR 2024)

			
Names: Bcl11B
Organisms: Mus musculus
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Length: 14
Consensus: aaaAACCACAaram
Weblogo: 
PSSM: P0      A      C      G      T
01  12474   8738   9184   9395      a
02  12446   9140   9828   8377      a
03  24743   5084   3712   6252      a
04  31408   2339   3044   3000      A
05  36130   1397   1662    602      A
06   1391  36798    762    840      C
07   1058  37476    416    841      C
08  36734    940    796   1321      A
09   1718  35985   1217    871      C
10  36053   1397   1246   1095      A
11  23689   3546   7120   5436      a
12  10421   7498  16303   5569      r
13  12181   9924   9372   8314      a
14  12097  10060   8218   9416      m
Type: Heterodimer
Binding TFs: Q99PV8 (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger, C2H2-type zinc finger)
Q99PV8
Binding Sites: MA1989.1.1 / MA1989.1.2
MA1989.1.10 / MA1989.1.13
MA1989.1.11 / MA1989.1.14
MA1989.1.12 / MA1989.1.15
MA1989.1.13 / MA1989.1.17
MA1989.1.14 / MA1989.1.19
MA1989.1.15
MA1989.1.16
MA1989.1.17
MA1989.1.18
MA1989.1.19
MA1989.1.2 / MA1989.1.3
MA1989.1.20
MA1989.1.3 / MA1989.1.4
MA1989.1.4 / MA1989.1.6
MA1989.1.5 / MA1989.1.7
MA1989.1.6 / MA1989.1.9
MA1989.1.10 / MA1989.1.7
MA1989.1.11 / MA1989.1.8
MA1989.1.12 / MA1989.1.9
MA1989.1.1
MA1989.1.16
MA1989.1.18
MA1989.1.20
MA1989.1.5
MA1989.1.8
			
Publications: Tang B, Di Lena P, Schaffer L, Head SR, Baldi P, Thomas EA. Genome-wide identification of Bcl11b gene targets reveals role in brain-derived neurotrophic factor signaling. PLoS One : (2011;6(9):e23691.). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.