Transcription Factor
| Accessions: | Q99PV8 (JASPAR 2024) |
| Names: | B-cell CLL/lymphoma 11B, B-cell lymphoma/leukemia 11B, BC11B_MOUSE, BCL-11B, COUP-TF-interacting protein 2, mRit1, Radiation-induced tumor suppressor gene 1 protein |
| Organisms: | Mus musculus |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Uniprot: | Q99PV8 |
| Length: | 884 |
| Pfam Domains: | 56-82 C2H2-type zinc finger 427-448 Zinc finger, C2H2 type 428-448 C2H2-type zinc finger 428-448 C2H2-type zinc finger 440-463 Zinc-finger double domain 454-476 C2H2-type zinc finger 454-476 Zinc finger, C2H2 type 787-808 Zinc finger, C2H2 type 787-808 C2H2-type zinc finger 788-808 C2H2-type zinc finger 800-824 Zinc-finger double domain 814-836 C2H2-type zinc finger 814-836 Zinc finger, C2H2 type 843-865 C2H2-type zinc finger 844-867 C2H2-type zinc finger 844-867 Zinc finger, C2H2 type |
| Sequence: (in bold interface residues) | 1 MSRRKQGNPQHLSQRELITPEADHVEATILEEDEGLEIEEPSSLGLMVGGPDPDLLTCGQ 60 61 CQMNFPLGDILVFIEHKKKQCGGLGPCYDKVLDKSSPPPSSRSELRRVSEPVEIGIQVTP 120 121 DEDDHLLSPTKGICPKQENIAGPCRPAQLPSMAPIAASSSHPPTSVITSPLRALGVLPPC 180 181 FPLPCCGARPISGDGTQGEGQMEAPFGCQCELSGKDEPSSYICTTCKQPFNSAWFLLQHA 240 241 QNTHGFRIYLEPGPASTSLTPRLTIPPPLGPETVAQSPLMNFLGDSNPFNLLRMTGPILR 300 301 DHPGFGEGRLPGTPPLFSPPPRHHLDPHRLSAEEMGLVAQHPSAFDRVMRLNPMAIDSPA 360 361 MDFSRRLRELAGNSSTPPPVSPGRGNPMHRLLNPFQPSPKSPFLSTPPLPPMPAGTPPPQ 420 421 PPAKSKSCEFCGKTFKFQSNLIVHRRSHTGEKPYKCQLCDHACSQASKLKRHMKTHMHKA 480 481 GSLAGRSDDGLSAASSPEPGTSELPGDLKAADGDFRHHESDPSLGPEPEDDEDEEEEEEE 540 541 LLLENESRPESSFSMDSELGRGRENGGGVPPGVAGAGAAAAALADEKALALGKVMEDAGL 600 601 GALPQYGEKRGAFLKRAGDTGDAGAVGCGDAGAPGAVNGRGGAFAPGAEPFPALFPRKPA 660 661 PLPSPGLGGPALHAAKRIKVEKDLELPPAALIPSENVYSQWLVGYAASRHFMKDPFLGFT 720 721 DARQSPFATSSEHSSENGSLRFSTPPGDLLDGGLSGRSGTASGGSTPHLGGPGPGRPSSK 780 781 EGRRSDTCEYCGKVFKNCSNLTVHRRSHTGERPYKCELCNYACAQSSKLTRHMKTHGQIG 840 841 KEVYRCDICQMPFSVYSTLEKHMKKWHGEHLLTNDVKIEQAERS |
| Interface Residues: | 436, 437, 438, 439, 440, 443, 444, 465, 466, 467, 468, 469, 471, 472, 796, 797, 798, 799, 800, 802, 803, 805, 806, 809, 824, 825, 826, 827, 828, 829, 830, 831, 832, 835, 854, 855, 856, 857, 858, 859, 860, 861, 865 |
| 3D-footprint Homologues: | 7y3l_A, 8cuc_F, 8gn3_A, 5kl3_A, 4m9v_C, 7n5w_A, 6jnm_A, 3uk3_C, 5v3j_F, 1tf3_A, 4x9j_A, 2gli_A, 8ssu_A, 1f2i_J, 5kkq_D, 5ei9_F, 1g2f_F, 1ubd_C, 2kmk_A, 1llm_D, 7ysf_A, 8ssq_A, 6blw_A, 5k5l_F, 6u9q_A, 8h9h_G, 6e94_A, 7y3m_I, 7w1m_H, 2lt7_A, 6a57_A, 2jpa_A, 5yel_A, 2wbs_A, 1tf6_A, 5yj3_D, 7txc_E, 5k5i_A, 6ml4_A, 2drp_D |
| Binding Motifs: | MA1989.1 aaaAACCACAaram MA1989.2 aAACCACAa |
| Binding Sites: | MA1989.2.11 MA1989.2.12 MA1989.1.1 / MA1989.1.2 MA1989.1.10 / MA1989.1.13 MA1989.1.11 / MA1989.1.14 MA1989.1.12 / MA1989.1.15 MA1989.1.13 / MA1989.1.17 MA1989.1.14 / MA1989.1.19 MA1989.1.15 MA1989.1.16 MA1989.1.17 MA1989.1.18 MA1989.1.19 MA1989.1.2 / MA1989.1.3 MA1989.1.20 MA1989.1.3 / MA1989.1.4 MA1989.1.4 / MA1989.1.6 MA1989.1.5 / MA1989.1.7 MA1989.1.6 / MA1989.1.9 MA1989.1.10 / MA1989.1.7 MA1989.1.11 / MA1989.1.8 MA1989.1.12 / MA1989.1.9 MA1989.1.1 MA1989.1.16 MA1989.1.18 MA1989.1.20 MA1989.1.5 MA1989.1.8 MA1989.2.1 MA1989.2.10 MA1989.2.13 MA1989.2.14 MA1989.2.15 MA1989.2.16 MA1989.2.17 MA1989.2.18 MA1989.2.19 MA1989.2.2 / MA1989.2.3 MA1989.2.20 MA1989.2.4 MA1989.2.5 / MA1989.2.9 MA1989.2.6 MA1989.2.7 MA1989.2.8 |
| Publications: | Tang B, Di Lena P, Schaffer L, Head SR, Baldi P, Thomas EA. Genome-wide identification of Bcl11b gene targets reveals role in brain-derived neurotrophic factor signaling. PLoS One : (2011;6(9):e23691.). [Pubmed] |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.