DNA Binding Motif

						

			
Accessions: 7ce1_D (3D-footprint 20231221)

			
Names: LacI-type transcription factor
Organisms: Agrobacterium tumefaciens A6
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Complex STRUCTURE OF TRANSCRIPTION FACTOR SghR with its COGNATE DNA
Length: 8
Consensus: CGTTGCAG
Weblogo: 
PSSM: P0      A      C      G      T
01      9     67     11      9      C
02      0      0     96      0      G
03      0      0      0     96      T
04      0      0      0     96      T
05     11      9     67      9      G
06      0     96      0      0      C
07     96      0      0      0      A
08     11      9     67      9      G
Binding TFs: 7ce1_D (Bacterial regulatory proteins, lacI family, Periplasmic binding proteins and sugar binding domain of LacI family, Periplasmic binding protein-like domain)
Binding Sites: 7ce1_c / 7ce1_d
			
Publications: Ye F, Wang C, Fu Q, Yan XF, Bharath SR, Casanas A, Wang M, Song H, Zhang LH, Gao YG. Structural basis of a novel repressor, SghR, controlling Agrobacterium infection by cross-talking to plants. J Biol Chem 295:12290-12304 (2020). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.