DNA Binding Motif

						

			
Accessions: 5hod_A (3D-footprint 20231221)

			
Names: LIM/homeobox protein Lhx4
Organisms: Homo sapiens
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Structure of LHX4 transcription factor complexed with DNA
Length: 7
Consensus: tnattaC
Weblogo: 
PSSM: P0      A      C      G      T
01     19     20     19     38      t
02     24     24     24     24      n
03     33     21     21     21      a
04     13     13     13     57      t
05     12     12     12     60      t
06     60     12     12     12      a
07      8     70     10      8      C
Binding TFs: 5hod_A (Homeobox domain, Homeobox KN domain)
Binding Sites: 5hod_B
5hod_C
			
Publications: Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.