DNA Binding Motif

Accessions: 5hod_A (3D-footprint 20231221)
Names: LIM/homeobox protein Lhx4
Organisms: Homo sapiens
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Structure of LHX4 transcription factor complexed with DNA
Length: 7
Consensus: tnattaC
01 19 20 19 38 t
02 24 24 24 24 n
03 33 21 21 21 a
04 13 13 13 57 t
05 12 12 12 60 t
06 60 12 12 12 a
07 8 70 10 8 C
Binding TFs: 5hod_A (Homeobox domain, Homeobox KN domain)
Binding Sites: 5hod_B
Publications: Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]

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