DNA Binding Motif

						

			
Accessions: 3mlp_EF (3D-footprint 20231221)

			
Names: Transcription factor COE1
Organisms: Mus musculus
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Early B-cell Factor 1 (Ebf1) bound to DNA
Length: 15
Consensus: TtCCCATGGGAAnAA
Weblogo: 
PSSM: P0      A      C      G      T
01      0      4      0     92      T
02     12     12      8     64      t
03      0     96      0      0      C
04      0     96      0      0      C
05      0     96      0      0      C
06     96      0      0      0      A
07      0      0      0     96      T
08      0      0     96      0      G
09      0      0     96      0      G
10      0      0     96      0      G
11     72      8      8      8      A
12     72      8      8      8      A
13     24     24     24     24      n
14     68     12      8      8      A
15     80      8      4      4      A
Type: Heterodimer
Binding TFs: 3mlp_E (IPT/TIG domain)
3mlp_F (IPT/TIG domain)
Binding Sites: 3mlp_G / 3mlp_H
			
Publications: Treiber N, Treiber T, Zocher G, Grosschedl R. Structure of an Ebf1:DNA complex reveals unusual DNA recognition and structural homology with Rel proteins. Genes & development 24:2270-5 (2010). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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