DNA Binding Motif

						

			
Accessions: 1nfk_AB (3D-footprint 20231221)

			
Names: PROTEIN (NUCLEAR FACTOR KAPPA-B (NF-KB))
Organisms: Mus musculus
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: STRUCTURE OF THE NUCLEAR FACTOR KAPPA-B (NF-KB) P50 HOMODIMER
Length: 10
Consensus: GGGAatTCCC
Weblogo: 
PSSM: P0      A      C      G      T
01      0      0     96      0      G
02      0      0     96      0      G
03      0      0     96      0      G
04     81     15      0      0      A
05     59      7     14     16      a
06      7     14     14     61      t
07      7      8      0     81      T
08      0     96      0      0      C
09      0     96      0      0      C
10      0     96      0      0      C
Binding TFs: 1nfk_A / 1nfk_B (Rel homology domain (RHD))
Binding Sites: 1nfk_C / 1nfk_D
			
Publications: Ghosh G., van Duyne G., Ghosh S., Sigler P. B. Structure of NF-kappaB p50 homodimer bound to a kappaB site. Nature 373:303-310 (1995). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.