DNA Binding Motif

						

			
Accessions: MA1907.1 (JASPAR 2024)

			
Names: Otp
Organisms: Ciona intestinalis
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: SELEX
Length: 20
Consensus: wwwwwawTTAATTaawtwww
Weblogo: 
PSSM: P0      A      C      G      T
01    460    104    110    326      w
02    375    117    139    369      w
03    290    140    140    430      w
04    264    125    130    481      w
05    409    120    135    336      w
06    553    132    135    179      a
07    415    122    153    309      w
08     93    131     59    717      T
09     74     43     17    867      T
10    950     15     22     13      A
11    959      9     16     16      A
12     79     19     19    883      T
13     39     32     34    895      T
14    578     62    139    221      a
15    501    117    203    179      a
16    396    178    142    283      w
17    244    152    133    471      t
18    262    138    106    494      w
19    472    106     90    332      w
20    434    108    142    316      w
Type: Heterodimer
Binding TFs: Q4H304 (Homeobox domain)
Q4H304
			
Publications: José-Edwards DS, Oda-Ishii I, Kugler JE, Passamaneck YJ, Katikala L, Nibu Y, Di Gregorio A. Brachyury, Foxa2 and the cis-Regulatory Origins of the Notochord. PLoS Genet : (2015). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.