Transcription Factor

						

			
Accessions: Q4H304 (JASPAR 2024)

			
Names: Q4H304_CIOIN
Organisms: Ciona intestinalis
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Uniprot: Q4H304
Length: 492
Pfam Domains:   268-324 Homeobox domain
Sequence: 
(in bold interface residues)		   1 MDSLIFESPKCDSHKIYEQDTVRMFEQTNQGWSDQCETTSCQFENQNCGKQQRYRHSIER   60
  61 CRFNEYGYERETPFPWSYDVSGVEATNENSSPPNAPGSNDSLSFTSPYEQYMEMSYDCDT  120
 121 STSEYENKETSAEQIPISANFDHFDPKLAALQKLVENQSSKKTWSCAQQENLPHSTTGVK  180
 181 KIESPKVSFKEEREDKPSTKNTSNEINLSHPKQKETTKLTQPTLDQTKQSNTPKQTNQLN  240
 241 AQKIKTPQKIPDSKKQEIMKKSEVTKSKRHRTRFAPSQLSELERSFSSTHYPDIFMREEI  300
 301 AHRIGLTESRVQVWFQNRRAKWKKRKAATSCGNPWPFQAAPAGNSFPFSGQVYQNSPSSA  360
 361 MAAAFANESFYALQNSAEGNWVTNAMTGFGKDINYGSNCMGPTTFPGQVMDMTSRVSDDV  420
 421 IAPNHPHEDMYQTFPEYPPTNVNYPHKSFYPPDDVSGEFTEKRVSNSPSQTHVTQRSFPM  480
 481 QSNPMPLYGAHY
Interface Residues: 220, 221, 222, 223, 225, 226, 232, 254, 268, 269, 270, 271, 309, 310, 312, 313, 316, 317, 319, 320, 321, 324
3D-footprint Homologues: 2h8r_B, 5zfz_A, 6a8r_A, 8pmf_A, 3cmy_A, 1puf_A, 3d1n_M, 8ejp_B, 1fjl_B, 1nk2_P, 1zq3_P, 1jgg_B, 2lkx_A, 6m3d_C, 3lnq_A, 7q3o_C, 2ld5_A, 6es3_K, 2hos_A, 8eml_B, 1b72_A, 3a01_E, 1ig7_A, 5jlw_D, 3rkq_B, 4xrs_G, 9b8u_A, 4cyc_A, 8ik5_C, 5flv_I, 2hdd_A, 1au7_A, 2r5y_A, 1puf_B, 8osb_E, 7psx_B, 5hod_A, 1e3o_C, 1le8_A, 4j19_B, 4qtr_D, 1o4x_A, 8g87_X, 1du0_A, 8bx1_A, 5zjt_E
Binding Motifs: MA1907.1 wwwwwawTTAATTaawtwww
MA1907.2 TTAATTa
			
Publications: José-Edwards DS, Oda-Ishii I, Kugler JE, Passamaneck YJ, Katikala L, Nibu Y, Di Gregorio A. Brachyury, Foxa2 and the cis-Regulatory Origins of the Notochord. PLoS Genet : (2015). [Pubmed]
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.