DNA Binding Motif
| Accessions: | MA1834.1 (JASPAR 2024) |
| Names: | Zm00001d034298 |
| Organisms: | Zea mays |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | ChIP-seq |
| Length: | 11 |
| Consensus: | scCCACGCGss |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 1331 2050 2146 1075 s 02 1471 2040 1597 1494 c 03 190 6091 160 161 C 04 41 5812 487 262 C 05 6373 128 17 84 A 06 55 6223 252 72 C 07 499 489 5256 358 G 08 418 5039 401 744 C 09 192 522 5681 207 G 10 1361 1886 1893 1462 s 11 1226 2323 1777 1276 s |
| Type: | Heterodimer |
| Binding TFs: | A0A1D6L6L0 (Helix-loop-helix DNA-binding domain) A0A1D6L6L0 |
| Binding Sites: | MA1834.1.1 MA1834.1.10 / MA1834.1.12 MA1834.1.11 / MA1834.1.13 MA1834.1.12 / MA1834.1.14 MA1834.1.13 / MA1834.1.15 MA1834.1.14 / MA1834.1.16 MA1834.1.15 MA1834.1.16 / MA1834.1.17 MA1834.1.17 / MA1834.1.18 MA1834.1.18 / MA1834.1.19 MA1834.1.19 MA1834.1.2 MA1834.1.20 MA1834.1.3 MA1834.1.4 MA1834.1.5 / MA1834.1.6 MA1834.1.6 / MA1834.1.8 MA1834.1.7 / MA1834.1.9 MA1834.1.10 / MA1834.1.8 MA1834.1.11 / MA1834.1.9 MA1834.1.4 MA1834.1.5 MA1834.1.7 |
| Publications: | Franco-Zorrilla J.M, López-Vidriero I, Carrasco J.L, Godoy M, Vera P, Solano R. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proceedings of the National Academy of Sciences of the United States of America : (2014). [Pubmed] |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.