Transcription Factor
| Accessions: | A0A1D6L6L0 (JASPAR 2024) |
| Names: | A0A1D6L6L0_MAIZE |
| Organisms: | Zea mays |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Length: | 422 |
| Pfam Domains: | 227-273 Helix-loop-helix DNA-binding domain |
| Sequence: (in bold interface residues) | 1 MDGNARSAATNQKKPVVADDDLVELLWHNGSVVAQPQAHQRPAPTYDPDRPGTSGLTGEE 60 61 TAAWFPDTLDDALEKDLYTQLWYSTIADAAPQHEGTLPGPTSQPSPSPPVGSSGVESSWA 120 121 GDICSTFCGSNQVLRTPARIRGKDAALQSELPSNTGAHDGTSSSGGSGSNYGGFGLPSDS 180 181 VHVQKRKGRCRDDSDSPSEDAECEEASEETKPSRRYGTKRRTRAAEVHNLSERRRRDRIN 240 241 EKMRALQELIPHCNKTDKASILDETIEYLKSLQMQVQIMWMTSGMAPMMFPGVHQFIPQM 300 301 ALGMNPGCIPAAQGLSQMPRLPYMNHTLPNHIHLNSSPAMNLMNPLNAANQVQIGHLRDA 360 361 SSHLLHLDGGRAAVVPQVPGPGPHVHGHQIAQAEEHNKILEVAASTVIPTSKAGQPPTLH 420 421 RV |
| Interface Residues: | 228, 229, 231, 232, 235, 236, 256, 258 |
| 3D-footprint Homologues: | 7rcu_E, 5nj8_D, 4h10_A, 6g1l_A, 5gnj_I, 7ssa_L, 7d8t_A, 5i50_B, 5v0l_A, 4zpk_A, 7f2f_B, 7xi3_A, 5eyo_A, 1am9_A, 4h10_B, 2ql2_D, 8osl_P, 2ypa_B, 1an4_A, 8osl_O, 7xi3_B, 7xhv_B, 5sy7_B, 5nj8_C, 5v0l_B |
| Binding Motifs: | MA1834.1 scCCACGCGss MA1834.2 CCACGCG |
| Binding Sites: | MA1834.1.1 MA1834.1.10 / MA1834.1.12 MA1834.1.11 / MA1834.1.13 MA1834.1.12 / MA1834.1.14 MA1834.1.13 / MA1834.1.15 MA1834.1.14 / MA1834.1.16 MA1834.1.15 MA1834.1.16 / MA1834.1.17 MA1834.1.17 / MA1834.1.18 MA1834.1.18 / MA1834.1.19 MA1834.1.19 MA1834.1.2 MA1834.1.20 MA1834.1.3 MA1834.1.4 MA1834.1.5 / MA1834.1.6 MA1834.1.6 / MA1834.1.8 MA1834.1.7 / MA1834.1.9 MA1834.1.10 / MA1834.1.8 MA1834.1.11 / MA1834.1.9 MA1834.2.10 / MA1834.2.13 / MA1834.2.14 / MA1834.2.2 / MA1834.2.20 / MA1834.2.9 MA1834.1.4 MA1834.1.5 MA1834.1.7 MA1834.2.1 / MA1834.2.11 / MA1834.2.17 MA1834.2.12 / MA1834.2.7 MA1834.2.15 / MA1834.2.4 MA1834.2.16 / MA1834.2.8 MA1834.2.18 MA1834.2.19 MA1834.2.3 MA1834.2.5 / MA1834.2.6 |
| Publications: | Franco-Zorrilla J.M, López-Vidriero I, Carrasco J.L, Godoy M, Vera P, Solano R. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proceedings of the National Academy of Sciences of the United States of America : (2014). [Pubmed] |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.