DNA Binding Motif

						

			
Accessions: M0144 (AthalianaCistrome v4_May2016)

			
Names: AT1G04880.ampDAP, T02553;
Organisms: Arabidopsis thaliana
Libraries: AthalianaCistrome v4_May2016 1
1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Length: 15
Consensus: aaAcyATATawTATA
Weblogo: 
PSSM: P0      A      C      G      T
01    371     45     71     77      a
02    327     38     64    135      a
03    549      1      0     14      A
04     37    375     67     85      c
05     33    237      0    294      y
06    434      0      0    130      A
07      0      0      0    564      T
08    555      0      9      0      A
09      8     34     67    455      T
10    339     32     95     98      a
11    265     31     52    216      w
12      3      9      2    550      T
13    564      0      0      0      A
14    108      1      9    446      T
15    415     44     70     35      A
Binding TFs: T02553 (HMG (high mobility group) box, ARID/BRIGHT DNA binding domain, Domain of unknown function (DUF1898))
			
Publications: O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.