Transcription Factor
| Accessions: | T02553 (AthalianaCistrome v4_May2016), Q9MAT6 (JASPAR 2024) |
| Names: | AT1G04880, T02553;, High mobility group B protein 15, HMG15_ARATH, Nucleosome/chromatin assembly factor group D 15 |
| Organisms: | Arabidopsis thaliana |
| Libraries: | AthalianaCistrome v4_May2016 1, JASPAR 2024 2 1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:ARID |
| Length: | 448 |
| Pfam Domains: | 32-116 ARID/BRIGHT DNA binding domain 260-326 Domain of unknown function (DUF1898) 263-330 HMG (high mobility group) box |
| Sequence: (in bold interface residues) | 1 MASSSCLKQGSVPMNNVCVTPEATYEAVVADPRLFMTSLERLHSLLGTKFMVPIIGGRDL 60 61 DLHKLFVEVTSRGGINKILNERRWKEVTATFVFPPTATNASYVLRKYYFSLLNNYEQIYF 120 121 FRSNGQIPPDSMQSPSARPCFIQGAIRPSQELQALTFTPQPKINTAEFLGGSLAGSNVVG 180 181 VIDGKFESGYLVTVTIGSEQLKGVLYQLLPQNTVSYQTPQQSHGVLPNTLNISANPQGVA 240 241 GGVTKRRRRRKKSEIKRRDPDHPKPNRSGYNFFFAEQHARLKPLHPGKDRDISRMIGELW 300 301 NKLNEDEKLIYQGKAMEDKERYRTEMEDYREKKKNGQLISNAVPLQQRLPEQNVDMAEAD 360 361 LPIDEVEEDDEEGDSSGSSGESEPHDDQSIETDPELEEPSLNPSGPNLNPNPTEIVVAPK 420 421 EKNGDVVMETSPLKKADEPTVAVTAEQN |
| Interface Residues: | 72, 85, 98, 99, 102, 103, 250, 252, 255, 265, 268, 270, 271, 274, 278, 286, 289, 290, 293 |
| 3D-footprint Homologues: | 2ypf_A, 2oeh_A, 1kqq_A, 2gzk_A, 3tmm_A, 1j5n_A, 1ckt_A, 4s2q_D |
| Binding Motifs: | M0144 aaAcyATATawTATA M0148 TWTAwTATAWaGTTTw UN0400.1 TWTAwTATAWaGTTTw |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.