DNA Binding Motif

						

			
Accessions: SOX6 (HumanTF2 1.0)

			
Names: SOX6
Organisms: Homo sapiens
Libraries: HumanTF2 1.0 1
1 Jolma A, Yin Y, Nitta KR, Dave K, Popov A, Taipale M, Enge M, Kivioja T, Morgunova E, Taipale J. DNA-dependent formation of transcription factor pairs alters their binding specificity. Nature 527:384-8 (2015). [Pubmed]
Notes: Site type: heterodimeric; Experiment type: HT-SELEX; HT-SELEX generated reference PWM
Length: 11
Consensus: caccgAACAAT
Weblogo: 
PSSM: P0      A      C      G      T
01    231    674    128    191      c
02    752    156    144    102      a
03    234    747    146    157      c
04    120    765    168    242      c
05    171    214    748    161      g
06    803     76     21     37      A
07    807      4      1     16      A
08      0    811      0      3      C
09    808     17      4     20      A
10    781     68    115     58      A
11     73    124     21    740      T
Binding TFs: SOX6_TF1 / SOX6_TF2 (HMG (high mobility group) box, Domain of unknown function (DUF1898))
			
Publications: Jolma A, Yin Y, Nitta KR, Dave K, Popov A, Taipale M, Enge M, Kivioja T, Morgunova E, Taipale J. DNA-dependent formation of transcription factor pairs alters their binding specificity. Nature 527:384-8 (2015). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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