DNA Binding Motif

						

			
Accessions: MA1233.3 (JASPAR 2024)

			
Names: ERF021
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: DAP-seq
Length: 8
Consensus: CrCCGACA
Weblogo: 
PSSM: P0      A      C      G      T
01    186   2340    102    531      C
02    889     15   2078    177      r
03     38   3024     76     21      C
04     19   3113     14     13      C
05     56      8   3076     19      G
06   2213    500    104    342      A
07     27   3048     44     40      C
08   2867     54    158     80      A
Type: Heterodimer
Binding TFs: Q9C9I2 (AP2 domain)
Q9C9I2
Binding Sites: MA1233.3.13 / MA1233.3.15 / MA1233.3.3
MA1233.3.9
MA1233.3.16
MA1233.3.20 / MA1233.3.4
MA1233.3.18
MA1233.3.1 / MA1233.3.8
MA1233.3.10
MA1233.3.11 / MA1233.3.17
MA1233.3.12
MA1233.3.14
MA1233.3.19
MA1233.3.2
MA1233.3.5
MA1233.3.6
MA1233.3.7
			
Publications: Magnani E, Sjölander K, Hake S. From endonucleases to transcription factors: evolution of the AP2 DNA binding domain in plants. Plant Cell 16:2265-77 (2004). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.