DNA Binding Motif

						

			
Accessions: 4uus_E (3D-footprint 20231221)

			
Names: HOMEOTIC PROTEIN ULTRABITHORAX
Organisms: Drosophila melanogaster
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: CRYSTAL STRUCTURE OF A UBX-EXD-DNA COMPLEX INCLUDING THE UBDA MOTIF
Length: 6
Consensus: TTATGG
Weblogo: 
PSSM: P0      A      C      G      T
01     11      9      9     67      T
02      9      9      9     69      T
03     96      0      0      0      A
04      0      0      0     96      T
05      0      0     96      0      G
06     11      9     67      9      G
Binding TFs: 4uus_E (Homeobox domain)
Binding Sites: 4uus_G
4uus_H
			
Publications: Foos N, Maurel-Zaffran C, Maté M.J, Vincentelli R, Hainaut M, Berenger H, Pradel J, Saurin A.J, Ortiz-Lombardía M, Graba Y. A flexible extension of the Drosophila ultrabithorax homeodomain defines a novel Hox/PBC interaction mode. Structure (London, England : 1993) 23:270-9 (2015). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.