DNA Binding Motif

						

			
Accessions: GCM1_FIGLA_2 (HumanTF2 1.0)

			
Names: GCM1_FIGLA
Organisms: Homo sapiens
Libraries: HumanTF2 1.0 1
1 Jolma A, Yin Y, Nitta KR, Dave K, Popov A, Taipale M, Enge M, Kivioja T, Morgunova E, Taipale J. DNA-dependent formation of transcription factor pairs alters their binding specificity. Nature 527:384-8 (2015). [Pubmed]
Notes: Site type: heterodimeric; Experiment type: CAP-SELEX
Length: 23
Consensus: CAssTGkkrbkkkrksrTGcGGG
Weblogo: 
PSSM: P0      A      C      G      T
01     21   1495     78     36      C
02   1495     64     78     46      A
03     16    544    951     41      s
04     26    564    930     15      s
05     87     55     85   1495      T
06     16      0   1495     22      G
07    102    298    639    456      k
08    279    285    505    426      k
09    384    325    501    284      r
10    254    428    434    378      b
11    345    267    477    405      k
12    277    343    496    379      k
13    282    337    487    388      k
14    387    313    450    344      r
15    304    274    531    385      k
16    234    414    502    344      s
17    697    174    535     88      r
18    131    157    341   1495      T
19    459    114   1495     10      G
20    311   1495    397    410      c
21    211     94   1495    355      G
22     16     45   1495     61      G
23     17     19   1495     32      G
Type: Heterodimer
Binding TFs: FIGLA_TF2 (Helix-loop-helix DNA-binding domain)
GCM1_TF1 (GCM motif protein)
			
Publications: Jolma A, Yin Y, Nitta KR, Dave K, Popov A, Taipale M, Enge M, Kivioja T, Morgunova E, Taipale J. DNA-dependent formation of transcription factor pairs alters their binding specificity. Nature 527:384-8 (2015). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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