DNA Binding Motif

						

			
Accessions: PAX5_HUMAN.H10MO.A|M01422 (HOCOMOCO 10)

			
Names: PAX5
Organisms: Homo sapiens
Libraries: HOCOMOCO 10 1
1 Kulakovskiy IV, Vorontsov IE, Yevshin IS, Soboleva AV, Kasianov AS, Ashoor H, Ba-Alawi W, Bajic VB, Medvedeva YA, Kolpakov FA, Makeev VJ. HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models. Nucleic Acids Res : (2016). [Pubmed]
Notes: Paired domain only{3.2.2}; PAX-2-like factors (partial homeobox){3.2.2.2}
Length: 21
Consensus: scvdrgkCAgysraSCrkRAC
Weblogo: 
PSSM: P0      A      C      G      T
01     85    161    176     76      s
02     89    204    106     99      c
03    133    135    178     52      v
04    130     46    170    152      d
05    153     31    300     14      r
06    105    104    197     92      g
07     12    106    252    128      k
08     11    394      7     86      C
09    370     35     75     18      A
10    106    108    253     31      g
11      8    304     36    150      y
12    106    220    152     20      s
13    271     10    212      5      r
14    279     30    108     81      a
15      7    143    348      0      S
16      7    392      7     92      C
17    132     23    324     19      r
18     56     18    137    287      k
19    142     11    342      3      R
20    347     20    100     31      A
21     90    364     20     24      C
Binding TFs: PAX5_HUMAN ('Paired box' domain, Paired-box protein 2 C terminal)
			
Publications: Kulakovskiy IV, Vorontsov IE, Yevshin IS, Soboleva AV, Kasianov AS, Ashoor H, Ba-Alawi W, Bajic VB, Medvedeva YA, Kolpakov FA, Makeev VJ. HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models. Nucleic Acids Res : (2016). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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