DNA Binding Motif

						

			
Accessions: 3zpl_AB (3D-footprint 20231221)

			
Names: PUTATIVE MARR-FAMILY TRANSCRIPTIONAL REPRESSOR
Organisms: 2) / M145, Streptomyces coelicolor (strain ATCC BAA-471 / A3
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Crystal structure of Sco3205, a MarR family transcriptional regulator from Streptomyces coelicolor, in complex with DNA
Length: 19
Consensus: AAnGTTGAnnnnTCAAnCT
Weblogo: 
PSSM: P0      A      C      G      T
01     73      3     10     10      A
02     90      2      2      2      A
03     24     24     24     24      n
04      5      2     87      2      G
05      2      2      2     90      T
06      0      0      0     96      T
07      0      0     96      0      G
08     88      2      2      4      A
09     24     24     24     24      n
10     24     24     24     24      n
11     24     24     24     24      n
12     24     24     24     24      n
13      2      2      4     88      T
14      0     96      0      0      C
15     90      1      5      0      A
16     80      2     12      2      A
17     24     24     24     24      n
18     12     68      7      9      C
19      4      2      2     88      T
Binding TFs: 3zpl_A / 3zpl_B (MarR family, MarR family, Winged helix DNA-binding domain)
Binding Sites: 3zpl_C / 3zpl_D
			
Publications: Stevenson C.E, Assaad A, Chandra G, Le T.B, Greive S.J, Bibb M.J, Lawson D.M. Investigation of DNA sequence recognition by a streptomycete MarR family transcriptional regulator through surface plasmon resonance and X-ray crystallography. Nucleic acids research 41:7009-22 (2013). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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