DNA Binding Motif
| Accessions: | MA2111.1 (JASPAR 2024) |
| Names: | HNF4 |
| Organisms: | Ciona intestinalis |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | SELEX |
| Length: | 14 |
| Consensus: | tTGGACTTTGrmCy |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 167 81 192 561 t 02 23 117 18 842 T 03 15 8 959 19 G 04 214 19 740 26 G 05 811 167 12 11 A 06 8 976 7 9 C 07 9 58 10 923 T 08 24 58 25 893 T 09 32 39 29 899 T 10 59 57 815 69 G 11 358 126 384 131 r 12 454 374 81 90 m 13 56 796 66 82 C 14 53 454 62 432 y |
| Type: | Heterodimer |
| Binding TFs: | Q4H3D5 (Ligand-binding domain of nuclear hormone receptor, Zinc finger, C4 type (two domains)) Q4H3D5 |
| Publications: | Yagi K, Satou Y, Mazet F, Shimeld SM, Degnan B, Rokhsar D, Levine M, Kohara Y, Satoh N. A genomewide survey of developmentally relevant genes in Ciona intestinalis. III : (Genes). [Pubmed] |
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