Transcription Factor

						

			
Accessions: Q4H3D5 (JASPAR 2024)

			
Names: Q4H3D5_CIOIN
Organisms: Ciona intestinalis
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Uniprot: Q4H3D5
Length: 512
Pfam Domains:   107-175 Zinc finger, C4 type (two domains)
  228-411 Ligand-binding domain of nuclear hormone receptor
Sequence: 
(in bold interface residues)		   1 MMDADMHSNYGLDAVNPDQLYQDMIPSLQDSPTSLHGNGPDIGAFTYGMPHPMSPAHPMN   60
  61 PSPTADVPIHPISPESVGMPGGLINGHGSDHESNTSMVGEGDGVRTFCAICGDRATGKHY  120
 121 GASSCDGCKGFFRRSVRKNHQYQCRFSRNCTVDKDKRNQCRYCRLRKCFRAGMKREAVQN  180
 181 ERDRISTKKSTIDDSASLSVTTLLNADTMSKQPSAGSAGDVTDTVSIENKKIASVNDVCD  240
 241 SIRQQLLVLVEWAKYIPAFSELPLDDQVALLRAHAGENLLMGAAKRSLPYKDVLLLGNDF  300
 301 IIPRHCPEVEITRVAVRVLDELVRPLADLSLDANEFACLKAIVFFDPDARGLNNPTKIKQ  360
 361 MRSQVMCNLEDYINDRQYDSRGRFGEILLLLPTLQSITWQMIEQIQFVRIFGVARVDNLL  420
 421 QEMLLGSANEAQASMIPASAAQCGAMGPGSPTHISLANGMVPCSPGLMTMGEKPPNMSPT  480
 481 TPISPSMPQNMGQPIGMEIDSHVLLQPKSEIL
Interface Residues: 116, 117, 119, 120, 126, 127, 129, 130, 133, 134, 158, 180, 182, 184, 187, 189, 191
3D-footprint Homologues: 6fbq_A, 6l6q_B, 7wnh_D, 1lo1_A, 3g9m_B, 1a6y_A, 4oln_B, 1dsz_A, 4umm_E, 3cbb_A, 7xvn_C, 4iqr_B, 2han_A, 1hcq_E, 8cef_H, 5krb_G, 2han_B, 1kb2_B, 2a66_A, 8hbm_B, 2nll_B, 1lat_A, 7xv6_B, 2ff0_A, 8rm6_A, 5emc_A, 7prw_B, 5cbx_B, 3g6t_A, 1r4i_A, 5cbz_E, 4tnt_B, 5e69_A, 4hn5_B
Binding Motifs: UN0453.1 gracttTGGACTTTGrmCyytk
MA2111.1 tTGGACTTTGrmCy
			
Publications: Yagi K, Satou Y, Mazet F, Shimeld SM, Degnan B, Rokhsar D, Levine M, Kohara Y, Satoh N. A genomewide survey of developmentally relevant genes in Ciona intestinalis. III : (Genes). [Pubmed]
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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