DNA Binding Motif

						

			
Accessions: 6jpi_ABCD (3D-footprint 20231221)

			
Names: HTH cro/C1-type domain-containing protein
Organisms: Pseudomonas aeruginosa, strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Crystal structure of PA4674 in complex with its operator DNA (28bp) from Pseudomonas aeruginosa
Length: 22
Consensus: TAACCnTTnACGTTAnnCGTTA
Weblogo: 
PSSM: P0      A      C      G      T
01      0      0      0     96      T
02     78      8      7      3      A
03     94      0      0      2      A
04      5     79      7      5      C
05      1     90      4      1      C
06     24     24     24     24      n
07      9      7     13     67      T
08      0      0      0     96      T
09     24     24     24     24      n
10     96      0      0      0      A
11      0     96      0      0      C
12      0      0     96      0      G
13      0      0      0     96      T
14     10      7      5     74      T
15     96      0      0      0      A
16     24     24     24     24      n
17     24     24     24     24      n
18      0     96      0      0      C
19     10      5     76      5      G
20      1      1      4     90      T
21      9     11      7     69      T
22     90      4      1      1      A
Type: Heterodimer
Binding TFs: 6jpi_A (Helix-turn-helix)
6jpi_B / 6jpi_D (Helix-turn-helix)
6jpi_C (Helix-turn-helix)
Binding Sites: 6jpi_E
6jpi_F
			
	
			


			

				

				
				
				
				

			

			

		

	
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