DNA Binding Motif

						

			
Accessions: 5wjq_D (3D-footprint 20231221)

			
Names: Zinc finger protein 568
Organisms: Mus musculus
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: mouseZFP568-ZnF2-11 in complex with DNA
Length: 24
Consensus: TGGnCGTGGCaCrGGTaAnwAGGG
Weblogo: 
PSSM: P0      A      C      G      T
01      2      4      2     88      T
02      0      0     96      0      G
03      0      0     96      0      G
04     24     24     24     24      n
05      6     84      4      2      C
06      0      0     96      0      G
07      0      0      0     96      T
08      0      0     96      0      G
09      0      0     96      0      G
10      0     96      0      0      C
11     62      7     11     16      a
12      0     96      0      0      C
13     43      0     52      1      r
14      0      0     96      0      G
15      0      0     96      0      G
16      0      0      0     96      T
17     64      9      9     14      a
18     96      0      0      0      A
19     24     24     24     24      n
20     45     12      9     30      w
21     96      0      0      0      A
22      0      0     96      0      G
23      0      0     96      0      G
24      0      0     96      0      G
Binding TFs: 5wjq_D (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger, C2H2-type zinc finger)
Binding Sites: 5wjq_A
5wjq_B
			
Publications: Patel A, Yang P, Tinkham M, Pradhan M, Sun MA, Wang Y, Hoang D, Wolf G, Horton JR, Zhang X, Macfarlan T, Cheng X. DNA Conformation Induces Adaptable Binding by Tandem Zinc Finger Proteins. Cell 173:221-233 (2018). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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