DNA Binding Motif

						

			
Accessions: ZSCAN9_2 (HT-SELEX2 May2017), UN0249.1 (JASPAR 2024)

			
Names: ZSCAN9
Organisms: Homo sapiens
Libraries: HT-SELEX2 May2017 1, JASPAR 2024 2
1 Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]

2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: HT-SELEX
Length: 20
Consensus: rrgGATAAGATAAGAAtCay
Weblogo: 
PSSM: P0      A      C      G      T
01   4895   1268   3706   1654      r
02   6979    809   3761    505      r
03   1871    577   8112   2688      g
04      0      2  11521      0      G
05  11523      0      2      0      A
06    298    126     12  11446      T
07  11521     13      3    296      A
08  11520      3      3      2      A
09      0      0  11523      0      G
10  11521      0      2      0      A
11      1      0      0  11523      T
12  11517      0      8      0      A
13  11523      0      2      2      A
14      0      3  11523     12      G
15  11291    648      2      0      A
16  11451      2     64    116      A
17    859   2405   2686   5573      t
18   1285  10443    307   1293      C
19   8117   2230   1496   1523      a
20   1645   4570   2231   3076      y
Type: Heterodimer
Binding TFs: ZSCAN9 (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger, C2H2-type zinc finger)
O15535 (Zinc finger, C2H2 type, SCAN domain, Zinc-finger double domain, C2H2-type zinc finger, C2H2-type zinc finger)
O15535
			
Publications: Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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