DNA Binding Motif

						

			
Accessions: MA1995.1 (JASPAR 2024)

			
Names: Npas4
Organisms: Mus musculus
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Length: 11
Consensus: vrTCGTGACws
Weblogo: 
PSSM: P0      A      C      G      T
01   2548   2273   2240   1899      v
02   2359   2197   2358   2046      r
03    540    492    702   7226      T
04    334   7713    580    333      C
05    515    350   7969    126      G
06    124    106    251   8479      T
07     56    184   8602    118      G
08   7460    622    367    511      A
09    404   7292    647    617      C
10   2441   1689   1553   3277      w
11   1961   2516   2481   2002      s
Type: Heterodimer
Binding TFs: Q8BGD7 (PAS fold)
Q8BGD7
Binding Sites: MA1995.1.1 / MA1995.1.2
MA1995.1.10 / MA1995.1.12
MA1995.1.11 / MA1995.1.13
MA1995.1.12 / MA1995.1.14
MA1995.1.13 / MA1995.1.15
MA1995.1.14 / MA1995.1.16
MA1995.1.15 / MA1995.1.17
MA1995.1.16 / MA1995.1.18
MA1995.1.17 / MA1995.1.19
MA1995.1.18 / MA1995.1.20
MA1995.1.19
MA1995.1.2 / MA1995.1.3
MA1995.1.20
MA1995.1.3 / MA1995.1.5
MA1995.1.4 / MA1995.1.6
MA1995.1.5 / MA1995.1.7
MA1995.1.6 / MA1995.1.8
MA1995.1.7 / MA1995.1.9
MA1995.1.10 / MA1995.1.8
MA1995.1.11 / MA1995.1.9
MA1995.1.1
MA1995.1.4
			
Publications: Brigidi GS, Hayes MGB, Delos Santos NP, Hartzell AL, Texari L, Lin PA, Bartlett A, Ecker JR, Benner C, Heinz S, Bloodgood BL. Genomic Decoding of Neuronal Depolarization by Stimulus-Specific NPAS4 Heterodimers. Cell 179:373-391 (2019). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.