DNA Binding Motif

						

			
Accessions: NHLH1_methyl_3 (HT-SELEX2 May2017)

			
Names: NHLH1
Organisms: Homo sapiens
Libraries: HT-SELEX2 May2017 1
1 Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]
Length: 18
Consensus: ggGbmgCAGCTGCGyCCc
Weblogo: 
PSSM: P0      A      C      G      T
01    249    153    561    281      g
02    154     90    923    217      g
03    154     13   1120    110      G
04    169    322    421    332      b
05    683    553     12      3      m
06    142    275    743    354      g
07      0   1241      0      8      C
08   1243     17      7      0      A
09      0     35   1207    139      G
10     32   1200     78      0      C
11      1      7      0   1247      T
12      9      6   1244      0      G
13     63   1155      0    182      C
14     25     13   1174    172      G
15     60    445    109    782      y
16    201   1136     39     37      C
17    227    934     44    126      C
18    197    720     99    228      c
Binding TFs: NHLH1 (Helix-loop-helix DNA-binding domain)
			
Publications: Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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