DNA Binding Motif

						

			
Accessions: GCM1_FIGLA_2_3_4_5_6_7_8_9 (HumanTF2 1.0)

			
Names: GCM1_FIGLA
Organisms: Homo sapiens
Libraries: HumanTF2 1.0 1
1 Jolma A, Yin Y, Nitta KR, Dave K, Popov A, Taipale M, Enge M, Kivioja T, Morgunova E, Taipale J. DNA-dependent formation of transcription factor pairs alters their binding specificity. Nature 527:384-8 (2015). [Pubmed]
Notes: Site type: heterodimeric; Experiment type: CAP-SELEX
Length: 20
Consensus: CAssTGkkgbkkbaTRCGGG
Weblogo: 
PSSM: P0      A      C      G      T
01      5   1238     53      2      C
02   1238      3     17     34      A
03      3   1181   1238      7      s
04     10   1238   2196      0      s
05      0      0      0   1238      T
06      0      0   1238      0      G
07     53    126    535    524      k
08    269    173    366    430      k
09    274    247    552    166      g
10    138    323    461    315      b
11    137    117    581    402      k
12    241    190    492    315      k
13    178    310    327    423      b
14    723    271    243      2      a
15     35     26    116   1238      T
16    526     41   1238      8      R
17    158   1238    106    273      C
18     51      9   1238    326      G
19      0      0   1238     30      G
20      0      3   1238      7      G
Type: Heterodimer
Binding TFs: FIGLA_TF2 (Helix-loop-helix DNA-binding domain)
GCM1_TF1 (GCM motif protein)
			
Publications: Jolma A, Yin Y, Nitta KR, Dave K, Popov A, Taipale M, Enge M, Kivioja T, Morgunova E, Taipale J. DNA-dependent formation of transcription factor pairs alters their binding specificity. Nature 527:384-8 (2015). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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