DNA Binding Motif

						

			
Accessions: ZNF660_2 (HT-SELEX2 May2017), UN0211.1 (JASPAR 2024)

			
Names: ZNF660
Organisms: Homo sapiens
Libraries: HT-SELEX2 May2017 1, JASPAR 2024 2
1 Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]

2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: HT-SELEX
Length: 18
Consensus: ayTGATkvCCCAyCCTay
Weblogo: 
PSSM: P0      A      C      G      T
01   7679   3303   3528   1193      a
02   4664   4794    742   8773      y
03      0     24      0  15700      T
04     39      0  15692      0      G
05  15300    578     28    146      A
06      3     24      0  15685      T
07   3695   1248   4840   5920      k
08   5761   4151   4132   1659      v
09    183  13769    524   4801      C
10     31  15611     36    131      C
11     73  15697     11     12      C
12  15003   1322   1483    870      A
13   3496   8693   1883   5655      y
14   2073  13506   1062   3197      C
15     28  14847      7   2723      C
16    877    783    774  15179      T
17   9803   1930   4496   1962      a
18   2529   6563   1751   4861      y
Type: Heterodimer
Binding TFs: Q6AZW8 / ZNF660 (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger, C2H2-type zinc finger)
Q6AZW8
			
Publications: Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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