DNA Binding Motif

						

			
Accessions: 1ddn_ABCD (3D-footprint 20231221)

			
Names: DIPHTHERIA TOX REPRESSOR
Organisms: Corynebacterium diphtheriae, strain ATCC 700971 / NCTC 13129 / Biotype gravis
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: DIPHTHERIA TOX REPRESSOR (C102D MUTANT)/TOX DNA OPERATOR COMPLEX
Length: 15
Consensus: AGGAtAGCTTnACCT
Weblogo: 
PSSM: P0      A      C      G      T
01     85      0      5      6      A
02     10      6     68     12      G
03      0      0     96      0      G
04     89      3      4      0      A
05     10     18      3     65      t
06     96      0      0      0      A
07      0      0     96      0      G
08      0     96      0      0      C
09      0      0      0     96      T
10      0      0      0     96      T
11     24     24     24     24      n
12     84      3      6      3      A
13      0     96      0      0      C
14      6     72     12      6      C
15      6      5      3     82      T
Binding TFs: 1ddn_A / 1ddn_B / 1ddn_C / 1ddn_D (Iron dependent repressor, N-terminal DNA binding domain, Iron dependent repressor, metal binding and dimerisation domain)
Binding Sites: 1ddn_E
1ddn_F
			
Publications: White A, Ding X, vanderSpek J.C, Murphy J.R, Ringe D. Structure of the metal-ion-activated diphtheria toxin repressor/tox operator complex. Nature 394:502-6 (1998). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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