DNA Binding Motif

						

			
Accessions: MA1262.1 (JASPAR 2024), M0109 (AthalianaCistrome v4_May2016)

			
Names: ERF2, ERF2.DAP, T21847;
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1, AthalianaCistrome v4_May2016 2
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]

2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Notes: DAP-seq
Length: 21
Consensus: ccdccrccdcCGCCGCCrycr
Weblogo: 
PSSM: P0      A      C      G      T
01     99    276     73    147      c
02    117    278     74    126      c
03    169     82    187    157      d
04     92    314     74    115      c
05    114    293     74    114      c
06    162     83    220    130      r
07     65    325     63    142      c
08    102    348     27    118      c
09    162     46    190    197      d
10     34    367     85    109      c
11    118    451      9     17      C
12     42      0    509     44      G
13      3    590      0      2      C
14      7    588      0      0      C
15     43      0    550      2      G
16      0    565      0     30      C
17      0    595      0      0      C
18    177      0    353     65      r
19     26    305     52    212      y
20    122    251     78    144      c
21    218     29    212    136      r
Type: Heterodimer
Binding TFs: O80338 / T21847 (AP2 domain)
O80338
Binding Sites: MA1262.1.6
MA1262.1.7
MA1262.1.5
MA1262.1.10
MA1262.1.1
MA1262.1.11
MA1262.1.12
MA1262.1.13
MA1262.1.14
MA1262.1.15
MA1262.1.16
MA1262.1.17
MA1262.1.18
MA1262.1.19
MA1262.1.2
MA1262.1.20
MA1262.1.3
MA1262.1.4
MA1262.1.8
MA1262.1.9
			
Publications: Hao D., Ohme-Takagi M., Sarai A. Unique mode of GCC box recognition by the DNA-binding domain of ethylene-responsive element-binding factor (ERF domain) in plant. J. Biol. Chem. 273:26857-26861 (1998). [Pubmed]


O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.