DNA Binding Motif

						

			
Accessions: GCM1_FIGLA_2_3_4_5_6_7_8_9_10 (HumanTF2 1.0)

			
Names: GCM1_FIGLA
Organisms: Homo sapiens
Libraries: HumanTF2 1.0 1
1 Jolma A, Yin Y, Nitta KR, Dave K, Popov A, Taipale M, Enge M, Kivioja T, Morgunova E, Taipale J. DNA-dependent formation of transcription factor pairs alters their binding specificity. Nature 527:384-8 (2015). [Pubmed]
Notes: Site type: heterodimeric; Experiment type: CAP-SELEX
Length: 19
Consensus: CAssTGkhgbkrrTRcGGG
Weblogo: 
PSSM: P0      A      C      G      T
01      8   1009     19      0      C
02   1009      8     17     30      A
03      2    658   1009      0      s
04     16   1009   2091      0      s
05      1      0     13   1009      T
06     18      4   1009      1      G
07     63    132    486    327      k
08    261    266    216    266      h
09    106    232    466    204      g
10     75    355    265    314      b
11    188    137    335    349      k
12    357    151    266    235      r
13    632     98    267     11      r
14     53     13     77   1009      T
15    347     13   1009      2      R
16     96   1009    295    320      c
17    112     33   1009     98      G
18      7      4   1009     10      G
19      9      0   1009      0      G
Type: Heterodimer
Binding TFs: FIGLA_TF2 (Helix-loop-helix DNA-binding domain)
GCM1_TF1 (GCM motif protein)
			
Publications: Jolma A, Yin Y, Nitta KR, Dave K, Popov A, Taipale M, Enge M, Kivioja T, Morgunova E, Taipale J. DNA-dependent formation of transcription factor pairs alters their binding specificity. Nature 527:384-8 (2015). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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