DNA Binding Motif

						

			
Accessions: 5d5v_B (3D-footprint 20231221)

			
Names: Heat shock factor protein 1
Organisms: Homo sapiens
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Crystal structure of human Hsf1 with Satellite III repeat DNA
Length: 7
Consensus: CnTTCCA
Weblogo: 
PSSM: P0      A      C      G      T
01      9     67      9     11      C
02     24     24     24     24      n
03      9     11      9     67      T
04      0      0      0     96      T
05      0     96      0      0      C
06      0     96      0      0      C
07     69      9      9      9      A
Binding TFs: 5d5v_B (HSF-type DNA-binding)
Binding Sites: 5d5v_A
5d5v_C
			
Publications: Neudegger T, Verghese J, Hayer-Hartl M, Hartl FU, Bracher A. Structure of human heat-shock transcription factor 1 in complex with DNA. Nat Struct Mol Biol 23:140-6 (2016). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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