DNA Binding Motif

						

			
Accessions: HOXC11_full_2 (HumanTF 1.0)

			
Names: HOXC11
Organisms: Homo sapiens
Libraries: HumanTF 1.0 1
1 Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]
Notes: Site type: monomeric; SELEX cycle: 4
Length: 11
Consensus: rgymATAAAam
Weblogo: 
PSSM: P0      A      C      G      T
01    384    137    336    164      r
02    283    246   1021     81      g
03     18    620     32    401      y
04   1021    947    169     70      m
05   1021     11    111     86      A
06     81      0     28   1021      T
07    803     58     13    219      A
08   1021      0      5     86      A
09   1021     68      0     43      A
10   1021    216     77    224      a
11    382    266    177    197      m
Binding TFs: HOXC11_full (Homeobox domain, Protein of unknown function (DUF3528))
			
Publications: Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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