DNA Binding Motif

						

			
Accessions: MA1425.1 (JASPAR 2024)

			
Names: HYH
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: PBM
Length: 12
Consensus: grwsACGTGkca
Weblogo: 
PSSM: P0      A      C      G      T
01    201    201    396    201      g
02    372    152    321    152      r
03    283     72     72    571      w
04     23    350    523    102      s
05    999      0      0      0      A
06      0    999      0      0      C
07      0      0    999      0      G
08      0      0      0    999      T
09     48    154    747     48      G
10    203     97    392    306      k
11    177    466    177    177      c
12    321    226    226    226      a
Type: Heterodimer
Binding TFs: Q8W191 (bZIP transcription factor, Basic region leucine zipper)
Q8W191
			
Publications: Holm M., Ma L. G., Qu L. J., Deng X. W. Two interacting bZIP proteins are direct targets of COP1-mediated control of light-dependent gene expression in Arabidopsis.. Genes Dev. 16:1247-1259 (2002). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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