DNA Binding Motif

						

			
Accessions: RARG_DBD_1 (HumanTF 1.0)

			
Names: RARG
Organisms: Homo sapiens
Libraries: HumanTF 1.0 1
1 Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]
Notes: Site type: dimeric; SELEX cycle: 3
Length: 17
Consensus: grGGTCAAAAGGTCAma
Weblogo: 
PSSM: P0      A      C      G      T
01   1188   1759   4748    156      g
02   3654    394   2344     12      r
03      3      1   5096      7      G
04      0      0   4813    481      G
05      4     22     88   5660      T
06      2   7680    109     76      C
07   6439      0     38      1      A
08   6311     78     55    265      A
09   6298     19    409    665      A
10   6302     19    315      1      A
11      5      0   5139      1      G
12      0      0   5009   1370      G
13     24     20     40   5635      T
14      2   7766     76     81      C
15   6935      1     26      5      A
16   1902   3299   1220    468      m
17   5029    948   1603   1574      a
Binding TFs: RARG_DBD (Zinc finger, C4 type (two domains))
			
Publications: Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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