DNA Binding Motif
| Accessions: | UP00094A_2 (UniPROBE 20160601) |
| Names: | 9630016P15Rik, MGC113768, mZnf8, Zfp128, zinc finger protein 128 |
| Organisms: | Mus musculus |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 14 |
| Consensus: | kkTATAywTATAmc |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.20 0.18 0.26 0.35 k 02 0.13 0.08 0.53 0.26 k 03 0.12 0.09 0.08 0.71 T 04 0.68 0.04 0.18 0.09 A 05 0.14 0.07 0.06 0.73 T 06 0.68 0.07 0.13 0.11 A 07 0.20 0.30 0.08 0.42 y 08 0.36 0.14 0.19 0.31 w 09 0.11 0.13 0.07 0.68 T 10 0.73 0.06 0.07 0.14 A 11 0.09 0.18 0.04 0.68 T 12 0.71 0.08 0.09 0.12 A 13 0.36 0.37 0.16 0.12 m 14 0.20 0.36 0.25 0.20 c |
| Binding TFs: | UP00094A (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger, C2H2-type zinc finger) |
| Binding Sites: | ACGTACGC AGCGTACG AGGCGTAC AGTACGCC ATGCGTAC CGTACGCA CGTACGCC CGTACGTC GACGTACC GCGTACCA GGACGTAC GGCGTACA GGCGTACC GGGCGTAC GGTACGAC GGTACGCA GTACGACA GTACGCCA GTACGTCA AGTCGTAC |
| Publications: | Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed] |
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