DNA Binding Motif

						

			
Accessions: 1d5y_CD (3D-footprint 20231221)

			
Names: ROB TRANSCRIPTION FACTOR
Organisms: Escherichia coli, strain K12
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: CRYSTAL STRUCTURE OF THE E. COLI ROB TRANSCRIPTION FACTOR IN COMPLEX WITH DNA
Length: 6
Consensus: caGCAC
Weblogo: 
PSSM: P0      A      C      G      T
01     15     49     17     15      c
02     31     21     23     21      a
03      4      4     81      7      G
04      0     96      0      0      C
05     67      9      9     11      A
06      9     67      9     11      C
Binding TFs: 1d5y_C / 1d5y_D (Bacterial regulatory helix-turn-helix proteins, AraC family, GyrI-like small molecule binding domain, Helix-turn-helix domain)
Binding Sites: 1d5y_O
1d5y_P
			
Publications: Kwon HJ., Bennik MH., Demple B., Ellenberger T. Crystal structure of the Escherichia coli Rob transcription factor in complex with DNA. Nat Struct Biol. 7(5):424-30 (2000). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.