DNA Binding Motif

						

			
Accessions: EEAD0031 (EEADannot 2023-12-22)

			
Names: ARF18_DYAD7
Organisms: Zea mays
Libraries: EEADannot 2023-12-22 1
1 Contreras-Moreira B, Sebastian A. FootprintDB: Analysis of Plant Cis-Regulatory Elements, Transcription Factors, and Binding Interfaces. Methods Mol Biol 1482:259-77 (2016) [Pubmed]
Length: 18
Consensus: arACAwrrwayarACAaa
Weblogo: 
PSSM: P0      A      C      G      T
01    367    152    100     36      a
02    183     58    369     45      r
03    655      0      0      0      A
04      0    655      0      0      C
05    655      0      0      0      A
06    192     86     98    279      w
07    169    117    292     77      r
08    195    106    225    129      r
09    189    101     94    271      w
10    303    108    137    107      a
11    133    169    123    230      y
12    348    162     99     46      a
13    178     46    388     43      r
14    655      0      0      0      A
15      0    655      0      0      C
16    655      0      0      0      A
17    341     68    104    142      a
18    288    118    149    100      a
Binding TFs: AuxinResponseFactor18 (AUX/IAA family, B3 DNA binding domain, Auxin response factor)
			
Publications: Galli M, Khakhar A, Lu Z, Chen Z, Sen S, Joshi T, Nemhauser JL, Schmitz RJ, Gallavotti A. The DNA binding landscape of the maize AUXIN RESPONSE FACTOR family. Nat Commun 9:4526 (2018). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.