Transcription Factor
| Accessions: | AuxinResponseFactor18 (EEADannot 2023-12-22) |
| Names: | ARF18, GRMZM2G035405 |
| Organisms: | Zea mays |
| Libraries: | EEADannot 2023-12-22 1 1 Contreras-Moreira B, Sebastian A. FootprintDB: Analysis of Plant Cis-Regulatory Elements, Transcription Factors, and Binding Interfaces. Methods Mol Biol 1482:259-77 (2016) [Pubmed] |
| Notes: | family:ARF |
| Length: | 913 |
| Pfam Domains: | 134-235 B3 DNA binding domain 260-343 Auxin response factor 773-869 AUX/IAA family |
| Sequence: (in bold interface residues) | 1 MRLSSSSGSVLPAQPGSPEAVEEHKCLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQV 60 61 AASTNKEIESQIPNYPNLPPQLICQLHNVTMHADAETDEVYAQMTLQPLNPQELKDPYLP 120 121 AELGSANKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFTQQPPCQELMAKDLH 180 181 GNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNDNNQLLLGIRRANRPQT 240 241 VMPSSVLSSDSMHIGLLAAAAHAASTNSRFTIFYNPRASPSEFVIPLVKYVKAVYHTRIS 300 301 VGMRFRMLFETEESSVRRYMGTITGICDLDSVRWPNSHWRSVKVGWDESTAGERQPRVSL 360 361 WEIEPLTTFPMYPSPFPLRLKRPWPTGLPSLHGGKDDDLANSLMWLRDTANPGFQSLNFG 420 421 GLGMSPWMQPRLDATLLGLQPDMYQAMATAAFQDATKQASPTMLQFQQPQNIAGRASPLL 480 481 SSQILQQAHHQFQQQPYLQNISESTIQAQGQSEFLKQQIQRSQSFNEQKPQMQHQQESQQ 540 541 QQQPQCLPVPQHQQMQQQNMTNYQSISNALSPFSQLSPVSQSSPMALQTILPFSQAQSFT 600 601 DTNVGSLSPSNGNTMQNTLRPFSSEAVSHLSMPRPTAIPVADPWSSKRVAVESLLPSRPQ 660 661 VSSQMEQLDPAPASIPHSSALAPLPGRGCLVDQDVNSDPQNHLLFGVSIDSQSLLMQGGI 720 721 PGLQNGNDSAAIPYSTSNFLSPSQNDFPLDHTLNSSGCLDDSGYVPPCSDNSDKVNRPPA 780 781 TFVKVYKSGTYGRSLDITRFSSYHELRRELGRLFGLEGQLEDPLRSGWQLVFVDREEDVL 840 841 LVGDDPWQEFVSTVSCIKILSPQEVQQMGKQGLELLSSAPARRLGSSCDDYVSRQESRSL 900 901 STGIASVGSVELG |
| Interface Residues: | 139, 141, 146, 147, 148, 149, 150, 151, 191, 192, 193, 194, 195, 196, 197 |
| 3D-footprint Homologues: | 6j9b_A, 7et6_A, 6sdg_B, 3hqf_A, 6ycq_A, 6fas_B |
| Binding Motifs: | EEAD0029 CmGACA EEAD0032 smGACAwrwwkkwmmwwywTGTCks EEAD0030 cmgACAarammmgACAwa EEAD0031 arACAwrrwayarACAaa |
| Related annotations: | PaperBLAST |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.