DNA Binding Motif

						

			
Accessions: 1a3q_AB (3D-footprint 20231221)

			
Names: PROTEIN (NUCLEAR FACTOR KAPPA-B P52)
Organisms: Homo sapiens
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: HUMAN NF-KAPPA-B P52 BOUND TO DNA
Length: 11
Consensus: GGGGATTCCCC
Weblogo: 
PSSM: P0      A      C      G      T
01     11      9     67      9      G
02      0      0     96      0      G
03      0      0     96      0      G
04      0      0     96      0      G
05     69      9      9      9      A
06      0      0      0     96      T
07      9     11      9     67      T
08      0     96      0      0      C
09      0     96      0      0      C
10      0     96      0      0      C
11      0     96      0      0      C
Binding TFs: 1a3q_A / 1a3q_B (Rel homology domain (RHD))
Binding Sites: 1a3q_C
1a3q_D
			
Publications: Cramer P, Larson C.J, Verdine G.L, Müller C.W. Structure of the human NF-kappaB p52 homodimer-DNA complex at 2.1 A resolution. The EMBO journal 16:7078-90 (1997). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.