DNA Binding Motif

						

			
Accessions: 2i9t_AB (3D-footprint 20231221)

			
Names: Transcription factor p65
Organisms: Mus musculus
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Structure of NF-kB p65-p50 heterodimer bound to PRDII element of B-interferon promoter
Length: 10
Consensus: GGaanTtCCC
Weblogo: 
PSSM: P0      A      C      G      T
01      1      2     92      1      G
02      0      0     95      1      G
03     62     12      9     13      a
04     39     19     19     19      a
05     24     24     24     24      n
06     10     11      9     66      T
07     12     12     14     58      t
08      2     91      2      1      C
09      0     95      0      1      C
10      6     79      8      3      C
Type: Heterodimer
Binding TFs: 2i9t_B (Rel homology domain (RHD))
2i9t_A (Rel homology domain (RHD))
Binding Sites: 2i9t_C
2i9t_D
			
Publications: Escalante C.R, Shen L, Thanos D, Aggarwal A.K. Structure of NF-kappaB p50/p65 heterodimer bound to the PRDII DNA element from the interferon-beta promoter. Structure (London, England : 1993) 10:383-91 (2002). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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