DNA Binding Motif

						

			
Accessions: 1yrn_B (3D-footprint 20231221)

			
Names: PROTEIN (MAT ALPHA2 HOMEODOMAIN)
Organisms: Saccharomyces cerevisiae, Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: CRYSTAL STRUCTURE OF THE MATA1/MATALPHA2 HOMEODOMAIN HETERODIMER BOUND TO DNA
Length: 7
Consensus: aTTTACA
Weblogo: 
PSSM: P0      A      C      G      T
01     61     14     14      7      a
02     16      7      7     66      T
03     16      7      7     66      T
04      0      0      0     96      T
05     89      0      0      7      A
06      0     96      0      0      C
07     96      0      0      0      A
Binding TFs: 1yrn_B (Homeobox domain, Homeobox KN domain)
Binding Sites: 1yrn_C
1yrn_D
			
Publications: Li T, Stark M.R, Johnson A.D, Wolberger C. Crystal structure of the MATa1/MAT alpha 2 homeodomain heterodimer bound to DNA. Science (New York, N.Y.) 270:262-9 (1995). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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